Research outputs

Publications

All peer-reviewed publications till date

Filter by fieldAll Precision medicine Rare diseases Psychoactive drugs Other

2026Effectiveness and tolerability of cannabidiol in paediatric epilepsy: a one-year multisite prospective studyHalman, A, Freeman, J, Fahey, M, Chenhall, R, Perkins, DEpilepsy & Behavior, doi: 10.1016/j.yebeh.2026.111095Psychoactive Drugs 2026Special Issue on the Promise of Psychedelic Pharmacology in Neuropsychiatric Drug DevelopmentHalman, A, Corriden, RPharmacology Research & Perspectives, doi: 10.1002/prp2.70309Psychoactive Drugs 2026Genetic Susceptibility to Anthracycline-Induced Cardiotoxicity in Australian Pediatric Cancer PatientsHalman, A, Netylko, J, Stolper, J, Rossello, F, Ludlow, L, Mateos, M, Celermajer, D, Kumar, S, Elliott, D, Conyers, RJACC: Advances, doi: 10.1016/j.jacadv.2026.103105Precision Medicine 2026Clinical Pharmacogenetics Implementation Consortium (CPIC) Guideline for CYP2D6 Genotype and Use of 5-HT3 Receptor Antagonists: 2026 UpdateMoore, C, Bourque, M, Halman, A, Agúndez, J, Prows, C, Hikino, K, Schwab, M, Oxencis, C, Chauhan, D, Diekstra, M, Long, S, Bell, G, Gaedigk, A, Whirl‐Carrillo, M, Klein, T, Caudle, K, Conyers, RClinical Pharmacology & Therapeutics, doi: 10.1002/cpt.70291Precision Medicine 2026Tacrolimus in Pediatric Solid Organ Transplant Recipients: A Retrospective Cohort StudyKhatri, D, Netylko, J, Metz, D, Sun, Y, Kausman, J, Mathew, J, Bannister, E, Gwee, A, Christodoulou, J, Stenta, T, Moore, C, Williams, E, Dyas, R, Stolper, J, Halman, A, Conyers, RPediatric Transplantation, doi: 10.1111/petr.70370Precision Medicine 2025Acute experiences and persisting psychological effects associated with an encapsulated DMT-harmala alkaloid combination: results of a phase 1 studyPerkins, D, Halman, A, Urokohara, A, Palumbo, J, Low, M, Ruffell, S, Galvão-Coelho, N, Collins, L, Norman, A, Sarris, JScientific Reports, doi: 10.1038/s41598-025-25767-xPsychoactive Drugs 2025Phenoconversion of CYP3A4, CYP2C19 and CYP2D6 in Pediatrics, Adolescents and Young Adults With Lymphoma: Rationale and Design of the PEGASUS StudyConyers, R, Stenta, T, Somogyi, A, Kirkpatrick, C, Halman, A, Wang, S, Moore, C, Khatri, D, Williams, E, Dyas, R, Spelman, T, Elliott, D, Gwee, A, Alexander, MClinical and Translational Science, doi: 10.1111/cts.70209Precision Medicine 2025Long-Term Mental Health and Wellbeing Outcomes Associated with Naturalistic Ayahuasca ConsumptionPagni, B, Halman, A, Sarris, J, Chenhall, R, Bogenschutz, M, Perkins, DJournal of Psychoactive Drugs, doi: 10.1080/02791072.2025.2465800Psychoactive Drugs 2025Harnessing Pharmacogenomics in Clinical Research on Psychedelic-Assisted TherapyHalman, A, Conyers, R, Moore, C, Khatri, D, Sarris, J, Perkins, DClinical Pharmacology & Therapeutics, doi: 10.1002/cpt.3459Psychoactive Drugs 2025Frequency and Implications of High-Risk Pharmacogenomic Phenotypes Identified in a Diverse Australian Pediatric Oncology CohortMoore, C, Halman, A, Stenta, T, Khatri, D, Williams, E, Dyas, R, Stolper, J, Elliott, D, Conyers, RClinical and Translational Science, doi: 10.1111/cts.70246Precision Medicine 2025Changes in Pain and Mental Health Symptoms Associated with Prescribed Medicinal Cannabis Use: A One-Year Longitudinal StudyHalman, A, Chenhall, R, Perkins, DJournal of Pain and Palliative Care Pharmacotherapy, doi: 10.1080/15360288.2024.2414898Psychoactive Drugs 2025BCyrius: An Upgraded Version of Cyrius for Accurate CYP2D6 Genotyping From Short-Read Sequencing DataHalman, A, Conyers, RPharmacology Research & Perspectives, doi: 10.1002/prp2.70065Precision Medicine 2025CYP2D6 genotype and associated 5-HT3 receptor antagonist outcomes: A systematic review and meta-analysisMoore, C, Williams, E, Dyas, R, Halman, A, Stenta, T, Khatri, D, Elliott, D, Lange, P, Caudle, K, Conyers, RClinical and Translational Science, doi: 10.1111/cts.70108Precision Medicine 2024Pharmacogenomic studies of fertility outcomes in pediatric cancer survivors: A systematic reviewStenta, T, Assis, M, Ayers, K, Tucker, E, Halman, A, Gook, D, Sinclair, A, Elliott, D, Jayasinghe, Y, Conyers, RClinical and Translational Science, doi: 10.1111/cts.13827Precision Medicine 2024Minimising Adverse Drug Reactions and Verifying Economic Legitimacy-Pharmacogenomics Implementation in Children (MARVEL-PIC): protocol for a national randomised controlled trial of pharmacogenomics implementationConyers, R, Halman, A, Moore, C, Stenta, T, Felmingham, B, Collier, L, Khatri, D, Spelman, T, Williams, E, Dyas, R, Kotecha, R, Jessop, S, Mateos, M, Swen, J, Elliott, DBMJ Open, doi: 10.1136/bmjopen-2024-085115Precision Medicine 2024Drug-drug interactions involving classic psychedelics: A systematic reviewHalman, A, Kong, G, Sarris, J, Perkins, DJournal of Psychopharmacology, doi: 10.1177/02698811231211219Psychoactive Drugs 2024Catchii: Empowering literature review screening in healthcareHalman, A, Oshlack, AResearch Synthesis Methods, doi: 10.1002/jrsm.1675Other Research 2024Benchmarking pharmacogenomics genotyping tools: Performance analysis on short-read sequencing samples and depth-dependent evaluationHalman, A, Lunke, S, Sadedin, S, Moore, C, Conyers, RClinical and Translational Science, doi: 10.1111/cts.13911Precision Medicine 2024Associations Between Ayahuasca Use in Naturalistic Settings and Mental Health and Wellbeing Outcomes: Analysis of a Large Global DatasetPerkins, D, Sarris, J, Cowley-Court, T, Aicher, H, Tófoli, L, Carlos Bouso, J, Opaleye, E, Halman, A, Galvão-Coelho, N, Schubert, VJournal of Psychoactive Drugs, doi: 10.1080/02791072.2024.2424288Psychoactive Drugs 2024Artificial intelligence and psychedelic medicineSarris, J, Halman, A, Urokohara, A, Lehrner, M, Perkins, DAnnals of the New York Academy of Sciences, doi: 10.1111/nyas.15229Psychoactive Drugs 2024Analysis of Tandem Repeats in Short-Read Sequencing Data: From Genotyping Known Pathogenic Repeats to Discovering Novel ExpansionsHalman, A, Lonsdale, A, Oshlack, ACurrent Protocols, doi: 10.1002/cpz1.70010Rare Diseases 2023Toblerone: detecting exon deletion events in cancer using RNA-seqLonsdale, A, Halman, A, Brown, L, Kosasih, H, Ekert, P, Oshlack, AF1000Research, doi: 10.12688/f1000research.129490.1Rare Diseases 2023Integrated multi-omics for rapid rare disease diagnosis on a national scaleLunke, S, Bouffler, S, Patel, C, Sandaradura, S, Wilson, M, Pinner, J, Hunter, M, Barnett, C, Wallis, M, Kamien, B, Tan, T, Freckmann, M, Chong, B, Phelan, D, Francis, D, Kassahn, K, Ha, T, Gao, S, Arts, P, Jackson, M, Scott, H, Eggers, S, Rowley, S, Boggs, K, Rakonjac, A, Brett, G, de Silva, M, Springer, A, Ward, M, Stallard, K, Simons, C, Conway, T, Halman, A, Van Bergen, N, Sikora, T, Semcesen, L, Stroud, D, Compton, A, Thorburn, D, Bell, K, Sadedin, S, North, K, Christodoulou, J, Stark, ZNature Medicine, doi: 10.1038/s41591-023-02401-9Rare Diseases 2023Ayahuasca: A review of historical, pharmacological, and therapeutic aspectsRuffell, S, Crosland‐Wood, M, Palmer, R, Netzband, N, Tsang, W, Weiss, B, Gandy, S, Cowley‐Court, T, Halman, A, McHerron, D, Jong, A, Kennedy, T, White, E, Perkins, D, Terhune, D, Sarris, JPsychiatry and Clinical Neurosciences Reports, doi: 10.1002/pcn5.146Psychoactive Drugs 2022STRipy: A graphical application for enhanced genotyping of pathogenic short tandem repeats in sequencing dataHalman, A, Dolzhenko, E, Oshlack, AHuman Mutation, doi: 10.1002/humu.24382Rare Diseases 2022REViewer: haplotype-resolved visualization of read alignments in and around tandem repeatsDolzhenko, E, Weisburd, B, Ibañez, K, Rajan-Babu, I, Anyansi, C, Bennett, M, Billingsley, K, Carroll, A, Clamons, S, Danzi, M, Deshpande, V, Ding, J, Fazal, S, Halman, A, Jadhav, B, Qiu, Y, Richmond, P, Saunders, C, Scheffler, K, van Vugt, J, Zwamborn, R, Genomics England Research Consortium, Chong, S, Friedman, J, Tucci, A, Rehm, H, Eberle, MGenome Medicine, doi: 10.1186/s13073-022-01085-zRare Diseases 2020Accuracy of short tandem repeats genotyping tools in whole exome sequencing dataHalman, A, Oshlack, AF1000Research, doi: 10.12688/f1000research.22639.1Rare Diseases 2018STRetch: detecting and discovering pathogenic short tandem repeat expansionsDashnow, H, Lek, M, Phipson, B, Halman, A, Sadedin, S, Lonsdale, A, Davis, M, Lamont, P, Clayton, J, Laing, N, MacArthur, D, Oshlack, AGenome Biology, doi: 10.1186/s13059-018-1505-2Rare Diseases 2017Prefrontal cortical control of a brainstem social behavior circuitFranklin, T, Silva, B, Perova, Z, Marrone, L, Masferrer, M, Zhan, Y, Kaplan, A, Greetham, L, Verrechia, V, Halman, A, Pagella, S, Vyssotski, A, Illarionova, A, Grinevich, V, Branco, T, Gross, CNature Neuroscience, doi: 10.1038/nn.4470Psychoactive Drugs